Publications

* Denotes co-first authorship

2026

Karla M. Bergonzi*, Broc A. Burke*, Morgan Fogarty*, Arefeh Sherafati, Tracy M. Burns-Yocum, Silvina L. Ferradal, Ben Julian A. Palanca, Rajat Dhar, Gyanendra Kumar, Jin-Moo Lee , Joseph P. Culver, Adam T. Eggebrecht; Disrupted functional connectivity during stroke recovery revealed via bedside optical neuroimaging. Neurophotonics 2026; 10.1117/1.NPh.13.3.035002

2025

Wiete Fehner, Morgan Fogarty, Jerry Tang, Dana Wilhelm, Aahana Bajracharya, Zachary E. Markow, Amelia Hines, Jason W. Trobaugh, Alexander G. Huth, Joseph P. Culver; Visual Semantic Encoding and Identification of Naturalistic Movies via High-Density Diffuse Optical Tomography. biorxiv 2025; https://www.biorxiv.org/content/10.64898/2025.12.03.692158v1

Morgan Fogarty, Sean M. Rafferty, Zachary E. Markow, Anthony C. O’Sullivan, Calamity F. Svoboda, Tessa George, Kelsey King, Dana Wilhelm, Kalyan Tripathy, Emily M. Mugler, Stephanie Naufel, Allen Yin, Jason W. Trobaugh, Adam T. Eggebrecht, Edward J. Richter, Joseph P. Culver; Functional brain mapping using whole-head very-high-density diffuse optical tomography. Imaging Neuroscience 2025; doi: https://doi.org/10.1162/IMAG.a.54

Kalyan Tripathy*, Zachary E. Markow*, Morgan Fogarty*, Mariel L. Schroeder, Alexa M. Svoboda, Adam T. Eggebrecht, Bradley L. Schlaggar, Jason W. Trobaugh, Joseph P. Culver, "Multisensory naturalistic decoding with high-density diffuse optical tomography," Neurophoton. 12(1) 015002 (23 January 2025) https://doi.org/10.1117/1.NPh.12.1.015002

2024

Tripathy, K*., Fogarty, M.*, Svoboda, A. M., Schroeder, M. L., Rafferty, S. M., Richter, E. J., Tracy, C., Mansfield, P. K., Booth, M., Fishell, A. K., Sherafati, A., Markow, Z. E., Wheelock, M. D., Arbeláez, A. M., Schlaggar, B. L., Smyser, C. D., Eggebrecht, A. T., & Culver, J. P. (2024). Mapping brain function in adults and young children during naturalistic viewing with high-density diffuse optical tomography. Human Brain Mapping, 45(7), e26684. https://doi.org/10.1002/hbm.26684

2023

Constantini, I et al. (2023). A cellular resolution atlas of Broca’s area. Science Advances, Vol 9 Issue 41. DOI:10.1126/sciadv.adg3844

2022

Varadarajan, D., Magnain, C., Fogarty, M., Boas, D. A., Fischl, B., & Wang, H. (2022). A novel algorithm for multiplicative speckle noise reduction in ex vivo human brain OCT images. NeuroImage, 257. https://doi.org/10.1016/j.neuroimage.2022.119304

2021

Liu, C. J., Ammon, W., Siless, V., Fogarty, M., Wang, R., Atzeni, A., Aganj, I., Iglesias, J. E., Zöllei, L., Fischl, B., Schmahmann, J. D., & Wang, H. (2021). Quantification of volumetric morphometry and optical property in the cortex of human cerebellum at micrometer resolution. NeuroImage, 244. https://doi.org/10.1016/j.neuroimage.2021.118627

2019

Frau-Pascual, A., Fogarty, M., Fischl, B., Yendiki, A., & Aganj, I. (2019). Quantification of structural brain connectivity via a conductance model. NeuroImage, 189, 485–496. https://doi.org/10.1016/j.neuroimage.2019.01.033

Magnain, C., Augustinack, J. C., Tirrell, L., Fogarty, M., Frosch, M. P., Boas, D., Fischl, B., & Rockland, K. S. (2019). Colocalization of neurons in optical coherence microscopy and Nissl-stained histology in Brodmann’s area 32 and area 21. Brain Structure and Function, 224(1), 351–362. https://doi.org/10.1007/s00429-018-1777-z

2018

Sinha, L., Fogarty, M., Zhou, W., Giudice, A., Brankov, J. G., & Tichauer, K. M. (2018). Design and characterization of a dead-time regime enhanced early photon projection imaging system. Review of Scientific Instruments, 89(4). https://doi.org/10.1063/1.5003620